Publications

Yang Liu, PhD

Xu J, Liu Y. Imaging Higher-order Chromatin Structures in Single Cells Using Stochastic Optical Reconstruction Microscopy. Bio Protoc. 2019 Feb 5;9(3): doi: 10.21769/BioProtoc.3160. PubMed PMID: 30873426; PMCID: PMC6414075.
Nmezi B, Xu J, Fu R, Armiger TJ, Rodriguez-Bey G, Powell JS, Ma H, Sullivan M, Tu Y, Chen NY, Young SG, Stolz DB, Dahl KN, Liu Y, Padiath QS. Concentric organization of A- and B-type lamins predicts their distinct roles in the spatial organization and stability of the nuclear lamina. Proc Natl Acad Sci U S A. 2019 Feb 14; doi: 10.1073/pnas.1810070116. PubMed PMID: 30765529; PMCID: PMC6410836.
Ling X, Zhang S, Liu Y, Bai M. Light-activatable cannabinoid prodrug for combined and target-specific photodynamic and cannabinoid therapy. J Biomed Opt. 2018 Oct;23(10):1-9. doi: 10.1117/1.JBO.23.10.108001. PubMed PMID: 30334393.
Teng Y, Yadav T, Duan M, Tan J, Xiang Y, Gao B, Xu J, Liang Z, Liu Y, Nakajima S, Shi Y, Levine AS, Zou L, Lan L. ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB. Nat Commun. 2018 Oct 8;9(1):4115. doi: 10.1038/s41467-018-06586-3. PubMed PMID: 30297739; PMCID: PMC6175878.
Zhang J, Zhang S, Liu Y, Su M, Ling X, Liu F, Ge Y, Bai M. Combined CB2 receptor agonist and photodynamic therapy synergistically inhibit tumor growth in triple negative breast cancer. Photodiagnosis Photodyn Ther. 2018 Dec;24185-191. doi: 10.1016/j.pdpdt.2018.09.006. PubMed PMID: 30240926; PMCID: PMC6289793.
Xu J, Ma H, Jin J, Uttam S, Fu R, Huang Y, Liu Y. Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells. Cell Rep. 2018 Jul 24;24(4):873-882. doi: 10.1016/j.celrep.2018.06.085. PubMed PMID: 30044984; PMCID: PMC6154382.
Gao Y, Tan J, Jin J, Ma H, Chen X, Leger B, Xu J, Spagnol ST, Dahl KN, Levine AS, Liu Y, Lan L. SIRT6 facilitates directional telomere movement upon oxidative damage. Sci Rep. 2018 Mar 29;8(1):5407. doi: 10.1038/s41598-018-23602-0. PubMed PMID: 29599436; PMCID: PMC5876328.
Uttam S, Liu Y. Fourier phase based depth-resolved nanoscale nuclear architecture mapping for cancer detection. Methods. 2018 Mar 1;136134-151. doi: 10.1016/j.ymeth.2017.10.011. PubMed PMID: 29127043; PMCID: PMC5857421.
Pectasides E, Stachler MD, Derks S, Liu Y, Maron S, Islam M, Alpert L, Kwak H, Kindler H, Polite B, Sharma MR, Allen K, O'Day E, Lomnicki S, Maranto M, Kanteti R, Fitzpatrick C, Weber C, Setia N, Xiao SY, Hart J, Nagy RJ, Kim KM, Choi MG, Min BH, Nason KS, O'Keefe L, Watanabe M, Baba H, Lanman R, Agoston AT, Oh DJ, Dunford A, Thorner AR, Ducar MD, Wollison BM, Coleman HA, Ji Y, Posner MC, Roggin K, Turaga K, Chang P, Hogarth K, Siddiqui U, Gelrud A, Ha G, Freeman SS, Rhoades J, Reed S, Gydush G, Rotem D, Davison J, Imamura Y, Adalsteinsson V, Lee J, Bass AJ, Catenacci DV. Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma. Cancer Discov. 2018 Jan;8(1):37-48. doi: 10.1158/2159-8290.CD-17-0395. PubMed PMID: 28978556; PMCID: PMC5894850.
Xu J, Ma H, Liu Y. Stochastic Optical Reconstruction Microscopy (STORM). Curr Protoc Cytom. 2017 Jul 5;8112.46.1-12.46.27. doi: 10.1002/cpcy.23. PubMed PMID: 28678417; PMCID: PMC5663316.
Ma H, Xu J, Jin J, Huang Y, Liu Y. A Simple Marker-Assisted 3D Nanometer Drift Correction Method for Superresolution Microscopy. Biophys J. 2017 May 23;112(10):2196-2208. doi: 10.1016/j.bpj.2017.04.025. PubMed PMID: 28538156; PMCID: PMC5444076.
Ma H, Fu R, Xu J, Liu Y. A simple and cost-effective setup for super-resolution localization microscopy. Sci Rep. 2017 May 8;7(1):1542. doi: 10.1038/s41598-017-01606-6. PubMed PMID: 28484239; PMCID: PMC5431525.
Zhong L, Liu Y, Han WQ, Huang JY, Mao SX. In Situ Observation of Single-Phase Lithium Intercalation in Sub-25-nm Nanoparticles. Adv Mater. 2017 Jul;29(26): doi: 10.1002/adma.201700236. PubMed PMID: 28474747.
Gao Y, Li C, Wei L, Teng Y, Nakajima S, Chen X, Xu J, Leger B, Ma H, Spagnol ST, Wan Y, Dahl KN, Liu Y, Levine AS, Lan L. SSRP1 Cooperates with PARP and XRCC1 to Facilitate Single-Strand DNA Break Repair by Chromatin Priming. Cancer Res. 2017 May 15;77(10):2674-2685. doi: 10.1158/0008-5472.CAN-16-3128. PubMed PMID: 28416484; PMCID: PMC5500382.
Scuba W, Tharp M, Mowery D, Tseytlin E, Liu Y, Drews FA, Chapman WW. Knowledge Author: facilitating user-driven, domain content development to support clinical information extraction. J Biomed Semantics. 2016 Jun 23;7(1):42. doi: 10.1186/s13326-016-0086-9. PubMed PMID: 27338146; PMCID: PMC4919842.
Pham HV, Pantanowitz L, Liu Y. Quantitative phase imaging to improve the diagnostic accuracy of urine cytology. Cancer Cytopathol. 2016 Sep;124(9):641-50. doi: 10.1002/cncy.21734. PubMed PMID: 27177072; PMCID: PMC5026558.
Wang X, Fan F, Wang J, Wang H, Tao S, Yang A, Liu Y, Beng Chew H, Mao SX, Zhu T, Xia S. High damage tolerance of electrochemically lithiated silicon. Nat Commun. 2015 Sep 24;68417. doi: 10.1038/ncomms9417. PubMed PMID: 26400671; PMCID: PMC4598720.
Ma H, Xu J, Jin J, Gao Y, Lan L, Liu Y. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting. Sci Rep. 2015 Sep 22;514335. doi: 10.1038/srep14335. PubMed PMID: 26390959; PMCID: PMC4585720.
Uttam S, Pham HV, LaFace J, Leibowitz B, Yu J, Brand RE, Hartman DJ, Liu Y. Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens. Cancer Res. 2015 Nov 15;75(22):4718-27. doi: 10.1158/0008-5472.CAN-15-1274. PubMed PMID: 26383164; PMCID: PMC4651746.
Glassford WJ, Johnson WC, Dall NR, Smith SJ, Liu Y, Boll W, Noll M, Rebeiz M. Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty. Dev Cell. 2015 Sep 14;34(5):520-31. doi: 10.1016/j.devcel.2015.08.005. PubMed PMID: 26343453; PMCID: PMC4573913.
Sun L, Tan R, Xu J, LaFace J, Gao Y, Xiao Y, Attar M, Neumann C, Li GM, Su B, Liu Y, Nakajima S, Levine AS, Lan L. Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death. Nucleic Acids Res. 2015 Jul 27;43(13):6334-47. doi: 10.1093/nar/gkv598. PubMed PMID: 26082495; PMCID: PMC4513870.
Del Portillo A, Lagana SM, Yao Y, Uehara T, Jhala N, Ganguly T, Nagy P, Gutierrez J, Luna A, Abrams J, Liu Y, Brand R, Sepulveda JL, Falk GW, Sepulveda AR. Evaluation of Mutational Testing of Preneoplastic Barrett's Mucosa by Next-Generation Sequencing of Formalin-Fixed, Paraffin-Embedded Endoscopic Samples for Detection of Concurrent Dysplasia and Adenocarcinoma in Barrett's Esophagus. J Mol Diagn. 2015 Jul;17(4):412-9. doi: 10.1016/j.jmoldx.2015.02.006. PubMed PMID: 26068095; PMCID: PMC4484205.
Zeng Y, Liu Y, Shang J, Ma J, Wang R, Deng L, Guo Y, Zhong F, Bai M, Zhang S, Wu D. Phosphorescence monitoring of hypoxic microenvironment in solid-tumors to evaluate chemotherapeutic effects using the hypoxia-sensitive iridium (III) coordination compound. PLoS One. 2015;10(3):e0121293. doi: 10.1371/journal.pone.0121293. PubMed PMID: 25786221; PMCID: PMC4365010.

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