Program Members

Leader

Shou-Jiang Gao

Shou-Jiang Gao

Program: Cancer Virology

gaos8@upmc.edu G.17A Hillman Cancer Center Research Pavilion
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Haitao Guo

Haitao Guo

Program: Cancer Virology

Read More about Haitao Guo

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Members

Zandrea Ambrose

Zandrea Ambrose

Program: Cancer Virology

(412) 624-0512 zaa4@pitt.edu 450 Technology Drive
520 Bridgeside Point 2
Pittsburgh PA
Summary

Millions of people are infected with both HIV and HBV. Morbidity and mortality in HIV/HBV co-infection is higher than mono-infections and co-infection accelerates HBV-related liver disease with more frequent development of hepatocellular carcinoma (HCC), particularly when CD4 cell counts are low. Together with Dr. Haitao Guo, we will develop a murine model to study pathogenesis and HCC progression during HIV/HBV co-infection, which will be essential in evaluating mechanisms of infection as well as novel prevention methods, improved therapies, and curative strategies.

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Moses Bility

Moses Bility

Program: Cancer Virology

412-648-8058 mtbility@pitt.edu 2136 Parran Hall
130 DeSoto Street
Pittsburgh PA
Summary

Over 500 million people worldwide are infected with chronic liver pathogens including chronic hepatitis viruses and zoonotic liver flukes, which leads to severe liver diseases. Additionally, several studies have demonstrated that HIV co-infection exacerbate chronic HBV/HCV-induced liver diseases, resulting in increased mortality. The increased prevalence of obesity and metabolic syndrome-associated non-alcoholic fatty liver disease in the United States and other developed countries also contributes to the global liver disease burden, with approximately 25% of the US population affected. The development of therapeutics against these diseases has been hindered by the lack of robust small animal models that accurately recapitulates human disease; in most cases rodents are not susceptible to infections or are resistant to disease. The lack of robust small animal models of human infectious diseases also poses a major hindrance in studying emerging diseases such as Zika virus. Innate immune cell infiltration including macrophage infiltration is a major component of the inflammatory milieu associated with chronic liver infections, non-alcoholic steatohepatitis and most human infections. Importantly, macrophages play a critical role in innate immune response, modulating gut microbiota, macronutrients (i.e., iron, lipids, etc.) sensing and metabolism, and tissue integrity/remodeling; therefore, elucidating the role of macrophage activation in human infectious diseases and metabolic syndrome-associated diseases will provide novel insight into the mechanisms of immune dysregulation and tissue pathogenesis. The Bility lab is broadly interested in elucidating the role of macrophage polarization in human infectious diseases and obesity/metabolic syndrome-associated diseases utilizing humanized mouse models carrying autologous functional human immune system, human liver cells and other human organ systems along with strong emphasis on collaborative translational research with clinical investigators. Major research efforts are: 1) Elucidating the role of macrophage polarization in chronic liver infections (HBV, HCV, liver fluke), HIV-hepatitis virus co-infections and associated liver diseases; 2) Elucidating the nexus between macrophage polarization and gut microbiota in fatty diet-induced non-alcoholic steatohepatitis and associated liver diseases; 3) Developing humanized mouse model for human diseases, including viral hepatitis, HIV, arbovirus, etc. In addition to his biomedical research, Dr. Bility also has strong interests in health security and pandemic/disaster response and management. Dr. Bility has extensive training and expertise in medical planning and operations for various contingencies including pandemic, chemical, biological, radiological, and nuclear (CBRN) disaster events in both domestic and international conditions.

Research Interests and Keywords
  • HBV
  • HCV
  • Hepatitis
  • HIV
  • humanized mouse models
  • Inflammation
  • innate immunity
  • liver disease
  • Macrophage Activation
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Yuan Chang

Yuan Chang

Program: Cancer Virology

yc70@pitt.edu Hillman Cancer Center
5117 Centre Ave Suite 1.8
Pittsburgh PA
Summary

The work of our group (jointly directed by Patrick Moore and Yuan Chang) has focused on human tumor viruses since the early 1990s when we identified Kaposi's sarcoma associated herpesvirus (KSHV/HHV8) and showed that this virus was causally associated with Kaposi's sarcoma, the most common AIDS-related cancer in the United States and the most common malignancy in parts of Africa. We sequenced the KSHV genome, developed serologic assays, determined its prevalence in human populations, and characterized many of its critical viral oncoproteins. We have continued to study virus-host cell interactions in the context of dysregulation of pro-proliferative and anti-apoptotic pathways. We recently identified the seventh human tumor virus, Merkel cell polyomavirus (MCV), from a Merkel cell carcinoma (MCC). We characterized the transcriptional products of MCV and described the early region viral T antigen oncoproteins. Our work has established that MCV causes ~80% of MCC: we determined that the virus is clonally integrated in MCC tumor cells; that human tumor-associated Large T (LT) antigens contain signature truncation mutations; that T antigen proteins are expressed in MCC tumor cells by novel antibodies we developed; and we are the first laboratory to show rodent cell transformation by MCV sT antigen but not the LT antigen. We have identified several novel cellular interactors for MCV T antigens that open new avenues of investigating critical oncogenic signaling pathways. We have focused on many aspects of cancer etiology as modeled through oncogenic tumor viruses.

Research Interests and Keywords
  • digital transcriptome subtraction
  • Kaposi's sarcoma associated herpesvirus (KSHV)
  • Merkel cell polyomavirus (MCV)
  • tumor virus discovery
  • Tumor viruses
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James Conway

James Conway

Program: Cancer Virology

Summary

I study the structure and function of macromolecular complexes, such as virus capsids, using cryo-electron microscopy (cryoEM) to detail protein folds and interfaces. The resolution achieved by cryoEM depends on the sample, and we routinely aim for 3-5 Ångstroms but in some cases can reach below 2 Å resolution. Systems currently being studied include herpesviruses and dsDNA bacteriophages such as HK97, lambda, D3, T5 and others. These tailed phages have important structural similarities with each other and with animal viruses such as herpesvirus, indicating a long evolutionary connection between them. The dynamic aspects of the virus lifecycle – assembly, DNA packaging, infection, and DNA delivery – are better suited to cryoEM study than crystallography, and the non-symmetric but functionally important regions such as the capsid portal vertex and the phage tail-tip can now be resolved due to recent advances in cryoEM technology. In recent work we imaged the phage HK97 portal vertex where the dodecameric portal ring occupies a 5-fold symmetric vertex of the icosahedral capsid. The portal has several vital functions, including nucleating capsid assembly, packaging and releasing the viral dsDNA, and binding the phage tail assembly. However, the nature of the symmetry mismatch with the capsid has been a long-standing puzzle, but one we could solve by cryoEM visualization to reveal that the capsid protein's scaffold domain interfaces with the portal in a quasi-symmetric 12-10 arrangement. This has a number of implications for capsid assembly and maturation that extend to the herpesviruses. With Fred Homa (Dept. MMG) we have visualized a series of herpesvirus capsid mutants that build a picture of the structural steps involved in DNA packaging and we are applying the phage analysis methods to similarly detail the symmetry-breaking portal vertex. Characterizing the structural and functional repertoire of a virus throughout its lifecycle reveals protein-protein and protein-DNA interactions that could be targeted by highly specific anti-virals. In addition to these viral studies, I am involved with numerous groups to enable their structural investigations of SARS2-Covid 19 (Ambrose/Watkins, Cheng/Shi), GPCRs (Cheng/Xie), encapsulins (NIH), lipid nanoparticles and exosomes (Song, CMU, Duquesne), and Merkel Cell Polyomavirus (Chang/Moore).

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Neal DeLuca

Neal DeLuca

Program: Cancer Virology

ndeluca@pitt.edu 514 Bridgeside Point II
450 Technology Drive
Pittsburgh PA
Research Interests and Keywords
  • HSV-1-mediated regulation of gene expression
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Terence Dermody

Terence Dermody

Program: Cancer Virology

Summary

Terence S. Dermody is the Vira I. Heinz Distinguished Professor and Chair of Pediatrics at the University of Pittsburgh School of Medicine and physician-in-chief and scientific director at UPMC Children’s Hospital of Pittsburgh. He also is professor of microbiology and molecular genetics at the University of Pittsburgh School of Medicine.

With over 36 years of experience in basic virology and viral pathogenesis research, at his core, Dermody is a virologist. Most of his research has focused on reovirus, an important experimental model for studies of viral encephalitis in the young. His research contributions have enhanced an understanding of how these viruses enter into host cells and cause organ-specific disease.

Learn more about Dr. Dermody's work.

Read More about Terence Dermody
Andrea Gambotto

Andrea Gambotto

Program: Cancer Virology

gambottoa@upmc.edu 206 CNBIO
300 Technology Drive
Pittsburgh PA
Research Interests and Keywords
  • Development of adenoviral vector based vaccines for HIV-1 and influenza
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Shou-Jiang Gao

Shou-Jiang Gao

Program: Cancer Virology

gaos8@upmc.edu G.17A Hillman Cancer Center Research Pavilion
Read More about Shou-Jiang Gao
Joseph Glorioso

Joseph Glorioso

Program: Cancer Virology

glorioso@pitt.edu 450 Technology Drive
Suite 300
Pittsburgh PA
Summary

Dr. Glorioso has spent his career studying the molecular biology and immunology of HSV and the last 20 years developing HSV gene vectors for local and systemic therapies. He is a world-wide leader in this field and has the expertise to develop the technology related to the treatment of diseases of the peripheral and central nervous system. His interest in peripheral nerve disease has included nerve degeneration due to diabetes and cancer drug therapies that have led to treatments of animal models. Studies to understand the pathophysiology of chronic pain and the identification of gene therapy interventions that create effective pain therapies have been long standing interests and he was among the first to develop HSV vectors to treat pain. This research has culminated in clinical trials for treatment of cancer-related and arthritis pain. Dr. Glorioso has also focused his attention on neurodegenerative diseases that include SCA1 deficiency Alzheimer’s and Huntington's disease and the development of oncolytic vectors to treat brain tumors. Part of this research extends his application of HSV vectors for systemic delivery for treatment of metastatic cancer and muscular dystrophy. He has also recently developed HSV vectors for the creation and neuronal differentiation of human iPS cells derived from fetal brain and human dermal fibroblasts. His vector technology has been licensed to numerous biotech companies in which Dr. Glorioso serves as founder and/or consultant.

Research Interests and Keywords
  • chronic pain
  • Glioblastoma
  • HSV vectors
Read More about Joseph Glorioso
Angela Gronenborn

Angela Gronenborn

Program: Cancer Virology

412-648-9959 amg100@pitt.edu 1050 BST 3
Pittsburgh PA
Summary

Research in my lab combines nuclear magnetic resonance (NMR) spectroscopy and other structural biology methodologies with biophysics, biochemistry, and chemistry to investigate cellular processes at the molecular and atomic levels in relation to human disease. We presently focus on two main areas in biology: gene regulation and HIV pathogenesis. To understand how biological macromolecules work and intervene with respect to activity and function, detailed knowledge of their architecture and dynamic features is required. Evaluation of the major determinants for stability and conformational specificity of normal and disease-causing forms of these molecules will allow us to unravel the complex processes associated with disease. Our group is also developing new NMR methods, such as 19F in-cell NMR. 

Research Interests and Keywords
  • gene regulation
  • HIV pathogenesis
  • macromolecules
  • NMR
  • nuclear magnetic resonance spectroscopy
  • Protein Folding
  • Structural Biology
Read More about Angela Gronenborn
Haitao Guo

Haitao Guo

Program: Cancer Virology

Read More about Haitao Guo
Fred Homa

Fred Homa

Program: Cancer Virology

412-648-8788 flhoma@pitt.edu 515 Bridgeside Point II
450 Technology Drive
Pittsburgh PA
Summary

Dr. Homa's research is focused on understanding the molecular basis of herpes simplex virus type 1 (HSV-1) capsid assembly and viral genome packaging into the viral capsid. DNA encapsidation and cleavage involves the coordinated interaction of several HSV proteins that are essential for production of infectious virions. How these multi-protein assemblies associate and interact to accomplish this complex task touches on fundamental questions in biology. The HSV-1 genome is translocated into the icosahedral procapsid through a donut-shaped 'portal' that is present at one of the 12 vertices of the procapsid. This process is directed by the terminase complex, which consists of the HSV UL15, UL28, and UL33 proteins that function both as part of the ATP-hydrolyzing pump which drives DNA into the capsid, and also as a nuclease that cuts the concatemeric DNA at specific sites to yield a capsid containing the intact genome. The capsid is then stabilized by the addition of the capsid vertex specific component (CVSC), composed of the UL17 and UL25 proteins, which functions to retain the packaged DNA and to signal for nuclear egress of the mature DNA-filled capsid, as well as for nuclear attachment of the incoming, infecting capsid. Seven viral gene products are required for the stable packaging of viral DNA into the preformed HSV procapsid. Orthologs of these HSV DNA packaging genes are found in all three classes (alpha, beta, and gamma) of herpesviruses. Information obtained about the function of these proteins from these studies should therefore apply to other herpesviruses such as human cytomegalovirus, varicella zoster virus and Epstein-Barr virus.

Research Interests and Keywords
  • capsid assembly
  • DNA packaging
  • Herpes simplex virus type 1 (HSV-1)
Read More about Fred Homa
Yufei Huang

Yufei Huang

Program: Cancer Virology

(412) 623-2617 yuh119@pitt.edu The Assembly
5051 Centre Ave
Pittsburgh PA
Summary

In my role as leader in AI for Cancer Research, I work closely with Hillman PIs and Hillman leadership to develop the AI infrastructure and capability to advance clinical operation, clinical research, and basic cancer research. I envision building a robust AI capability at Hillman that can meet the AI needs for cutting-edge cancer research and be adapted to address new challenges. My current cancer-related research includes:
1. Mechanism of infection and oncogenesis by KSHV
Goals: Using a combination of bioinformatics/machine learning, high throughput profiling (scRNA-seq, in-situ-seq, 16s-seq, etc), and bench experiments to delineate the mechanism of KSHV-induced cellular transform and oncogenesis, elucidate pathogenesis of KSHV-associated cancers, and identify effective therapeutic targets and prognostic biomarkers. I have collaborated with Dr. SJ Gao and together have identified targets and pathways regulated by KSHV miRNAs (Nat. cell Biology, 2010), delineated the addicted cellular genes and networks by genome-wide CRISPR-Cas9 screening (MBIO 2019), performed the first genome-wide viral and cellular m6A profiling in multiple KSHV-infected systems (Nat. Microbiology 2018), and identified the signatures of oral microbiome in HIV-infected individuals with oral KSHV (PLOS PATHOGENS, 2019).
2. m6A mRNA modification/epitranscriptome and cancer
Goals: Using a combination of bioinformatics/machine learning and high throughput profiling technologies to 1) understand the mechanisms by which m6A regulates cancer and viral infection; 2) identify m6A related clinical makers. m6A/epitranscriptome is a new and rapidly advancing area that studies modifications in mRNAs. My lab leads the development of the computation tools for analyzing m6A profiling data and predicting m6A functions. The analysis pipeline for m6A sequencing, exomePeak, is being used widely and cited > 200 times (Google scholar) since 2015 by many high impact papers in Cell, Cell Stem Cel, Nature, Nature Cell Biology, Nature Neuroscience, Nature Genetics, and Cancer Cell. Using these tools, I have collaborated with Dr. Gao and other researchers to uncover new regulatory roles of m6A in regulating KSHV infection and breast cancer progression.
3. Functional interpretable deep learning models for cancer genomics
Goals: Develop novel deep learning models that can 1) perform phenotype predictions and, at the same time, 2) identifying markers and generate explainable mechanisms. Part of this project is funded by CPRIT (Cancer Prevention and Research Institute of Texas). We have developed several genomics-based deep learning/AI tools for cancer prognosis and survival analysis, drug response prediction, and gene dependence prediction (in silico CRISPR; Science Advances, 2021).

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Paul Kinchington

Paul Kinchington

Program: Cancer Virology

412-647-6590 kinch@pitt.edu Eye and Ear Institute
203 Lothrop Street, Room 1016
Pittsburgh PA
Summary

Dr. Kinchington's research program addresses the biology of two human alpha-herpesviruses (VZV and HSV) and their interaction with neurons in model systems. Both infect most of the human population, and have developed means to persist in the host sensory neurons, only to later reactivate and cause further disease that leads to significant human morbidity. Work is primarily focused on varicella-zoster virus (VZV), which causes chickenpox upon primary infection and the debilitating herpes zoster ("shingles") when the virus reactivates from latency. Zoster develops on a third of those infected with VZV, and most cases are painful. However, 30% develop long-term, intractable and debilitating chronic pain (post-herpetic neuralgia, or PHN) which is difficult to treat. Many neurological diseases, paralyses and brain infarctions are caused by VZV, and neurological problems may affect vision and cause blindness, such as stromal and retinal diseases, inflammation and ophthalmoplegia. Our work addresses two aspects of VZV. One addresses a model of VZV-induced pain in the rat, as a model of PHN. The model is not only used to address how VZV induces pain, but also to test new strategies for pain alleviation. A second VZV research program is using an in vitro model of VZV-human neuron interactions to address axonal transport and latency. The model uses human neurons derived in vitro from human stem cells and progenitors. We also study herpes simplex virus type 1 (HSV-1), which may repeatedly reactivate from latency and cause problematic recurrent diseases, such as blinding stromal keratitis. Using an HSV-1 mouse ocular infection model, we are seeking to evaluate and augment the blocking of reactivation of HSV-1 by the cellular immune response at the sensory nerve ganglion. Currently, we are determining the parameters required to modulate and improve the function, number and effectiveness of CD8 T cells that infiltrate the latently infected ganglia. This includes determining those viral proteins that are targeted by cellular immunity, and the factors governing HSV targets of immunodominance.

Research Interests and Keywords
  • herpes simplex virus
  • HSV
  • infectious eye disease
  • neuronal infection
  • pain and post-herpetic neuralgia
  • varicella
  • viral infection
  • viral latency
  • VZV
  • zoster
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Nara Lee

Nara Lee

Program: Cancer Virology

Summary

Many noncoding (nc)RNAs execute diverse cellular functions and are equally important as their coding counterparts. In recent years, owing to the development of cutting-edge technology, such as next-generation sequencing, the detection of ncRNAs and elucidation of their functions have been facilitated. However, compared to the large number of identified ncRNAs, only a minute fraction has been ascribed a specific function, as more and more surprising aspects regarding their mode of action are being uncovered.

Our lab studies the molecular function of two enigmatic ncRNAs from the Epstein-Barr virus (EBV) called EBER1 (EBV-encoded RNA 1) and EBER2. EBV is an oncogenic gamma-herpesvirus with a prevalence of over 90% in the human population and is associated with several types of cancers, such as lymphomas and carcinomas. We apply modern RNA techniques as well as refine existing tools to uncover the modes of action of these viral transcripts. Utilizing these methodologies, our work has revealed a role in transcription regulation for EBER2 and how it ensures efficient viral replication.

A second focus of research is centered on studying the genome architecture of influenza viruses. Given the fact that influenza viruses harbor a genome consisting of RNA, many of the RNA-centric tools we employ to study ncRNAs can be applied to examine how the viral RNA genome is organized during replication. Utilizing these methodologies, we have uncovered molecular details of how the genome associates with viral proteins and how long-range RNA-RNA interactions are essential for viral packaging.

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Renfeng Li

Renfeng Li

Program: Cancer Virology

Summary

Epstein-Barr virus (EBV) is the causative agent of nasopharyngeal cancer (a type of head and neck cancer), stomach cancer and several types of lymphomas. Each year 200,000 cancers worldwide are caused by EBV. The presence of EBV in cancer cells also provides a unique opportunity for targeted therapy by forcing tumor cells to reactivate latent EBV. The Li lab is focusing on understanding the molecular mechanisms by which viral and host factors control the transition of EBV from latency to reactivation with a goal of developing novel therapeutic strategies to cure EBV-associated cancer.

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John Mellors

John Mellors

Program: Cancer Virology

Summary

Dr. Mellors' laboratory focuses on resistance to antiretroviral drugs used for treatment and HIV prevention and on mechanisms of HIV persistence and strategies to deplete the reservoirs that are the barrier to curing HIV infection. His work on HIV reservoirs showed that low-level viremia persists in most individuals on long-term suppressive ART, and that the level of residual viremia is predicted by the level of viremia before ART. Current work focuses on identifying agents to reverse HIV latency and to eliminate HIV infected cells. The impact of innovative therapies on HIV reservoirs is being studied in Phase I/II trials of histone deacetylase inhibitors, monoclonal antibodies to immune checkpoint ligands, monoclonal antibodies to HIV envelope glycoproteins, and TLR agonists.

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Patrick Moore

Patrick Moore

Program: Cancer Virology

psm9@pitt.edu Hillman Cancer Center
Lab 1.8
Pittsburgh PA
Summary

Dr. Moore focuses his research on the link between viruses and cancer. Through his research, he hopes to answer why some viruses evolve to cause cancer while others cause nothing worse than the common cold. Dr. Moore and his wife, Yuan Chang, MD, discovered Kaposi’s sarcoma-associated herpesvirus (KSHV), also called human herpesvirus 8. KSHV causes Kaposi’s sarcoma, the most common malignancy occurring in AIDS patients. Kaposi’s sarcoma, a disease in which cancer cells are found in the tissues under the skin or mucous membranes, can be very aggressive in people whose immune systems are suppressed. Prior to this discovery, scientists had worked for 20 years to find an infectious agent associated with Kaposi’s sarcoma. He and Dr. Chang also are the discoverers of Merkel cell polyomavirus, which is the culprit that causes the rare and deadly skin cancer, Merkel cell carcinoma.

Research Interests and Keywords
  • Human tumor virology (KSHV, MCV, and digital transcriptome subtraction)
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Joseph Newsome

Joseph Newsome

Program: Cancer Virology

412-648-8950 jnewsome@pitt.edu 1050 South TE DLAR
Starzl Biomedical Science Tower 200 Lothrop Street
Pittsburgh PA
Research Interests and Keywords
  • dermatopathology
  • Immunopathology
  • infectious disease animal modeling
  • papillomavirus
  • vaccinology
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Saumendra Sarkar

Saumendra Sarkar

Program: Cancer Virology

saumen@pitt.edu Hillman Cancer Center
Lab 1.7 5117 Centre Avenue
Pittsburgh PA
Summary

Innate immunity of an organism is the inborn protection against invading pathogens. We are interested in the host innate immune response during virus infection and cancer. Although several basic principles of virus detection and host signaling have been identified, the specific mechanisms by which these pathways are modulated by host components during microbial infection or tumor progression remains poorly understood. Following are some of the specific research topic we are interested:

  1. Signaling mechanisms of type I Interferon (IFN) induction and modulation during DNA and RNA virus infection. 
  2. Mechanism of antiviral and antibacterial activity of IFN-stimulated genes (ISGs), such as IFN-inducible Oligoadenylate synthetase (OAS) family genes. 
  3. Differential roles of IFN-regulatory factors (IRFs) in tumor progression and immunotherapy of cancer. 

Research Interests and Keywords
  • anti-viral innate immunity
  • Innate Immunity Signaling
  • interferon (IFN)-stimulated genes
  • Tumor Microenvironment
  • type I IFN
  • IFN signaling
Read More about Saumendra Sarkar
Kathy Shair

Kathy Shair

Program: Cancer Virology

412-623-7717 shairk@upmc.edu 1.8 Hillman Cancer Center Research Pavilion
5117 Centre Ave
Pittsburgh PA
Summary

The Shair Lab studies the human tumor virus “Epstein-Barr virus,” a ubiquitous herpesvirus with 90-95% seropositivity among adults worldwide. The resulting chronic infection can lead to EBV-associated cancer, which can occur in the immune-competent, and the immune-compromised such as post-transplant patients and HIV+ patients. A major focus is to translate these molecular studies to benefit cancer risk assessment and to elucidate EBV molecular pathogenesis in EBV-associated B-cell lymphomas and epithelial cell cancers. One EBV-associated cancer we study is nasopharyngeal carcinoma (NPC), a cancer with high prevalence in specific ethnic populations such as Alaskan Inuits and Southeast Asians. Our projects apply principles in molecular virology, epidemiology, and cell biology. One unique resource at our disposal is a biobank of primary nasopharyngeal cells that we built at the UPMC Hillman Cancer Center. These samples are used to address questions regarding the cellular response to EBV infection in the nasopharyngeal epithelium using techniques such as 3-D cell culture, single cell RNA-sequencing, and microscopy. Furthermore, by studying the molecular signature of the cellular humoral response to EBV antigens, we have profiled the antibody repertoire in persons known to be at risk of developing NPC. This information can be used to develop a risk assessment assay for NPC. We are a highly collaborative team of diverse scientists that tackle questions in molecular virology using interdisciplinary science.

Research Interests and Keywords
  • Cancer Virology
  • Epstein-barr Virus
  • head and neck cancer
  • Nasopharyngeal Carcinoma
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Masahiro Shuda

Masahiro Shuda

Program: Cancer Virology

412-623-7733 shudam@upmc.edu Research Pavilion at Hillman Cancer Center, 1.9
5117 Centre Avenue
Pittsburgh PA
Summary

Studies on animal polyomaviruses have provided a wealth of information for cancer biology. Research on the simian and murine polyomaviruses (SV40 and PyV) led to the discovery of tumor suppressor proteins p53 and retinoblastoma (pRb) and unveiled the importance of tyrosine kinase activities in tumorigenic signaling. Our research exploits the human Merkel cell polyomavirus (MCV) that causes most Merkel cell carcinoma (MCC), a rare but deadly skin cancer that exhibits similarity to the tactile sensor “Merkel cells”. Despite the rarity of MCC, MCV infection is common, and nearly all healthy adults were asymptomatically infected and shed MCV from their skin. MCV is a small circular DNA virus that persists in currently unidentified dermal cells. There are two accidental events that are essential for MCV tumorigenesis and act as triggers that turn this common virus into a cancer-causing virus: insertion of linearized viral DNA into host cellular genome and introduction of a specific mutation that inactivates the viral replication enzyme.

By using molecular and cell biological approaches, our lab investigates: (1) MCV lifecycle processes, especially viral DNA replication, gene expression, and viral progeny production (2) MCV target cells wherein MCV persists or transforms into MCC, (3) biological triggers that disrupt the circular MCV DNA and facilitate insertion into host genome, and (4) critical cellular signaling activated by MCV proteins that promote MCC carcinogenesis. A full understanding of these events will help us prevent MCV-associated MCC, as well as identify therapeutic strategies for this deadly cancer.

Research Interests and Keywords
  • cancer cell signaling
  • Merkel cell carcinoma (MCC)
  • Merkel cell polyomavirus (MCV)
  • persistent infection
  • viral carcinogenesis
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Thomas Smithgall

Thomas Smithgall

Program: Cancer Virology

tsmithga@pitt.edu 530 Bridgeside Point II
450 Technology Drive
Pittsburgh PA
Summary

In theory, inhibition of undesirable enzymatic activity responsible for disease can be accomplished either directly at the active site or indirectly at a distance (allostery). Important examples of selective enzyme inhibition come from the field of protein-tyrosine kinases, an emerging therapeutic target class for cancer and infectious diseases. Virtually all clinically useful kinase inhibitors to date compete for ATP binding at the kinase domain active site. However, the high degree of protein kinase sequence and structural homology limits the development of highly selective ATP-competitive kinase inhibitors. Alternative drug discovery avenues include allosteric inhibitors that target structural features outside of the kinase domain active site that are unique to individual kinase subfamilies. Allosteric inhibitor mechanisms are likely to exhibit greater specificity for their intended kinase targets, and may also stabilize kinase domain conformations that promote the action of existing inhibitors targeting the active site. Based on these principles, we are actively engaged in a drug discovery campaign to find small molecules that enhance the natural allosteric mechanisms associated with kinase domain regulation. We have developed high-throughput screening approaches based on this concept to identify selective inhibitors for protein-tyrosine kinases of the non-receptor class, including members of the Src, Fes/Fps and Abl kinase families. Selective inhibitors emerging from these screens have promise for future development in the treatment of several forms of leukemia, multiple myeloma, and HIV/AIDS.

Research Interests and Keywords
  • Chemical biology
  • Drug Discovery
  • HIV/AIDS
  • Myeloid Leukemias
  • Protein-Tyrosine Kinases
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Clayton Wiley

Clayton Wiley

Program: Cancer Virology

wiley1@pitt.edu UPMC Presbyterian Hospital
Scaife Hall S701 200 Lothrop Street
Pittsburgh PA
Summary

1. Biomarkers of neuroinflammation: Using positron emission tomography (PET), we have recently imaged macrophage activation in human and non-human primate models of neurological disease. Using a novel radioligand (PK11195) to assess activated microglia in brains of living HIV-infected human and SIV-infected primates, these studies demonstrated the feasibility, but limited sensitivity of PK11195 PET in monitoring central nervous system (CNS) inflammation (Venneti et al., 2008; Venneti et al., 2004; Venneti et al., 2009; Wiley et al., 2009). While performing these PET studies, we took advantage of the study's serial time points to discover biomarkers of neuroinflammation in serum and cerebrospinal fluid. Using unbiased proteomic analysis with SELDI-TOF mass spectrometry, we discovered a highly sensitive and reproducible biomarker of CNS inflammation, chitinase 3-like 1 protein (CHI3L1). We and other groups have since observed expression of CHI3L1 in a broad spectrum of CNS inflammatory diseases (Bonneh-Barkay et al., 2010). 2. Control of neuroinflammation: While of great utility as a biomarker, CHI3L1 is becoming even more important as a member of a new class of proteins mechanistically involved in the control of neuroinflammation. These novel proteins modulate the interaction between inflammatory cells and CNS extracellular matrix. Using transgenic mice where the mouse homolog of CHI3L1 was deleted by homologous recombination, we have examined the role of this protein in animal models of multiple sclerosis (EAE) and traumatic brain injury (Bonneh-Barkay et al., 2012). In both models, deletion of CHI3L1 led to worse clinical and pathological outcome. Current studies in our lab are aimed at elucidating the molecular mechanism by which CHI3L1 limits inflammation and how to mimic its action using small molecules. These studies hold the potential of developing novel therapies to decrease neuroinflammation, potentially supplementing or synergistically interacting with current anti-inflammatories. 3. Age-related neurodegeneration: While intuitively obvious, it warrants remembering that the single most important determinant of neurodegeneration is age. Through extensive collaborations with the Alzheimer's Disease Research Center, we clinically document the neuropathology of AD and related diseases. The beta amyloid hypothesis of AD proposes that toxic fragments or oligomers of beta amyloid mediate neurodegeneration. We and others have explored the capacity of active immunization to eliminate beta amyloid from the aging primate brain (Kofler et al., 2012). Current studies in the lab are examining how lentiviral infection and combined anti-retroviral therapy modulate age related neurological processes and gene expression associated with neurodegeneration. 4. Viral encephalitis: Collaborations with other University of Pittsburgh investigators have allowed us to expand our studies of the brain's susceptibility to viral infections. Our research team has discovered the heightened susceptibility of the brain to aerosol transmission of common viral pathogens. Arboviruses that normally infect through insect vectors cause limited systemic disease, but when delivered through aerosol route, they rapidly cause lethal encephalitis. How the brain's innate immune response and systemic adaptive immunity protect the CNS is a current focus of the lab. We have discovered that host exposure to seasonal influenza determines susceptibility to lethal avian influenza. Newly proposed studies will elucidate the role of innate and adaptive immunity in conferring this protection. Importantly, from a public health perspective, this team is also researching how immunization protects or predisposes to encephalitis.

Research Interests and Keywords
  • Encephalitis
  • Inflammation
  • innate immune response
  • Macrophages
  • neurodegeneration
  • viral infection
Read More about Clayton Wiley

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